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JSim Kegg Models Page

This page allows users to run about 72,000 biochemical models from the Kegg Pathways Database under JSim. Each model consists of a single pathway for a single organism. 126 pathways and 825 organisms are represented, although no single organism has all possible pathways.

To run these models online, you must have a Java plugin installed in your WWW browser. To run them in JSim on your own computer, download the model code and the JSim application. Either way, see Running JSim for instructions on how to use JSim. The SBML models do not define the forward and backward reaction rate constants, so these must be specified by the user before running the models.

The models presented here were released by KEGG on Aug 9, 2008. See here for details.

Return to complete JSim model archives.

Organisms

Pathways

[This page was last modified 02Nov09, 10:38 am.]

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.